Hi. I am a Ph.D. candidate at Asai Laboratory.
I usually commute to Computational Biology Research Center  in Odaiba, Tokyo.

 

Profile:

  • Research Topics and Interests:
    • RNA informatics
    • Epigenetics
    • Personal genomics
    • Probability and Statistics
    • Causal analysis
  • Education:
    • 2011     Bachelor of Science, Department of Bioinformatics and Systems Biology, Faculty of Science, the University of Tokyo
      • Thesis: High-resolution Genome-wide Analysis of DNA Methylation and Nucleosome Positioning in Neurospora crassa (Abstract)
    • 2013     Master of Science, Department of Computational Biology, Graduate School of Frontier Sciences, the University of Tokyo
      • Thesis: Unavoidable Ambiguity of RNA Secondary Structure Estimation and Methods to Overcome It (Abstract)
    • 2013-   Ph.D. candidate, Department of Computational Biology, Graduate School of Frontier Sciences, the University of Tokyo
  • Job Experiences:
    • 2013-   Teaching Assistant at Asai Lab.
  • Scholarships:
    • 2012     一般財団法人丸文財団産学官交流助成
    • 2013-   Research Fellow of the Japan Society for the Promotion of Science (DC1)

Peer-reviewed Papers:

  1. Martin C Frith, Ryota Mori, Kiyoshi Asai, A mostly traditional approach improves alignment of bisulfite-converted DNA.Nucleic Acids Res, 40: 13., Jul., (2012)
  2. Ryota Mori, Michiaki Hamada, Kiyoshi Asai,  Efficient calculation of exact probability distributions of integer features on RNA secondary structures.BMC genomics, 15 Suppl 10:, Dec., (2014)

Talks:

  1. 森遼太, 生命科学の学術論文におけるデータマイニングの必要性と困難さ、及びそれに基づいた論理構造のツリー化と表現の標準化による新しい記述様式の提案, 次世代バイオインフォマティクス研究会, (2011)
  2. 森遼太CUDA によるGPGPU アプリケーションの開発, 次世代バイオインフォマティクス研究会, (2011)
  3. Mori R, Hamada M, Asai K, Analyzing the secondary structures of human lncRNAome, FANTOM5 analysis call, (2012)
  4. 森遼太, RNA二次構造のクレジビリティリミットと整数スコア分布, RNAインフォマティクス道場 in 札幌, (2014)
  5. 森遼太, RNA二次構造予測における本質的曖昧さを克服する新手法の開発, 生命情報科学若手の会第六回研究会, (2014)
  6. Mori R, Hamada M, Asai K, Efficient calculation of exact probability distributions of integer features on RNA secondary structures, GIW2014, (2014)
  7. 森遼太, 動的計画法を利用したRNA高次構造解析, 早稲田大学公開セミナー, (2015)

Posters:

  1. Mori R, Hamada M, Asai K, A quantitation and visualization technique for understanding high dimensional distribution of RNA structures, BiWO2012, (2012)
  2. Mori R, Hamada M, Asai K, Development of a Method for Measuring RNA Secondary Structure Stability Based on Canonical Distribution, 第14回日本RNA学会年会, (2012)
  3. Mori R, Hamada M, Asai K, Essential Ambiguity of RNA Secondary Structure Estimation and a Method to Overcome it, 6th AYRCOB, (2012)
  4. Mori R, Hamada M, Asai K, a Method for Measuring RNA Secondary Structure Stability and Reliability Based on Canonical Distribution, JSBi2012, (2012)
  5. Mori R, Hamada M, Asai K, A Method for Describing a Probability Distribution of RNA Secondary Structure Based on Canonical Distribution, 第35回分子生物学会年会, (2012)
  6. Mori R, Hamada M, Asai K, A fast and exact calculation for various score distributions of RNA secondary structure, BiWO2013, (2013)
  7. Mori R, Hamada M, Asai K, A Method for Calculating Stability of RNA Secondary Structure, JSBi2013, (2013)
  8. Mori R, Hamada M, Asai K, Credibility Limits Indicate Quantitative Reliability of Estimated RNA Secondary Structures, 第16回日本RNA学会年会, (2014)

Lectures:

  1. ゲノム配列解析論(2013/夏) (Lecture notes)
  2. ゲノム配列解析論(2014/夏) (Lecture notes)

Contributed articles:

  1. 森遼太, RNA二次構造予測における本質的曖昧さを克服する新手法の開発, CBRCニューズレター第41号, (2013)
  2. 森遼太リレー紹介:日本のバイオインフォマティクス研究室, JSBiニュースレター第29号, (2014)

Awards:

  1. 1st Poster Award, Computational Biology Research Center Workshop 2012